tribeColoring<-dd.tmp$tribeColor
names(tribeColoring)<-dd.tmp$tribe
GAGA.GenomeSize3<-facet_plot(GAGA.tree.plot3, 'Genome Size (Mbp)', data = dd.tmp, geom=geom_barh, mapping = aes(x=GS,fill=tribe),stat="identity")+
scale_fill_manual("Tribe" ,values = tribeColoring)+
theme_tree2()+
guides(fill="none")+
ylim(0,164)
## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.
We so far have genomic data for 163 species distributed across the 347 genera of ants (Fig 1.1), covering 27 tribes in 12 subfamilies. Myrmicinae are represented by 77 genomes, followed by Formicinae and Ponerinae with 39 and 21 genomes sequenced, respectively. With regard to the tribe, Crematogastrini make up the largest group with 35 genomes, followed by Attini and Ponerini with 25 and 20 genomes sequenced, respectively.
Figure 1.1: Ant genera targeted so far by GAGA. The Figure shows all extant genera of the Formicidae with the corresponding species sequenced by GAGA for the different genera.
Most (n= 125) of the species have been sequenced with PacBio, while some rare species (e.g. Leptanilla) could only be sequenced with stLFR (n= 20), commonly due to lack of sufficient biomass (Fig. 1.2). HiC sequencing was so far done for 15 species, allowing us to assemble chromosome-scale genomes for 18 species. Species highlighted in grey in the phylogeny were not assembled by GAGA but included in our comparative analyses as they met our quality criteria.
Most genomes reach high BUSCO scores (Fig ??), both against Hymenoptera (median 97 %) and Eukaryota (median 98 %). A few stLFR-only genomes however are incomplete, with BUSCO scores as low as ~70 % (e.g. Gigantiops destructor with 68.3 % complete Hymenoptera BUSCOs).
We have now also finalized the gene annotations for all species. On average, we annotated 13182 genes (range 10973 to 16903). BUSCO scores for the protein annotations were highly correlated with scores for the unannotated genome, indicating that our gene annotation approach is working well.
Figure 1.2: Sequencing techniques for different species. The left panel shows the techniques combined for genome sequencing of the different species. The right panel shows the coverage of RNAseq data, divided by caste, sex, and developmental stage.
The assembled genomes vary considerably in size, ranging from 188.61 MB (Cardiocondyla obscurior) to 594.51 MB (Odontomachus cf. monticola). Overall, genome size tends to vary most in the Ponerinae and least in the Formicinae. Figure 1.3 gives a complete overview of all so far sequenced species and the respective genome assembly size in Mb.
Figure 1.3: Genome sizes of GAGA genome assemblies
Our sequencing strategy has evolved further, now combining long-read PacBio data, linked-short-read stLFR data and if possible HiC data. We expect that together, these data will yield highly contiguous high quality genome assemblies that should be close to chromosome-resolution for most of the species.
Figure 1.4 gives a rough overview of the quality of the genome assemblies we have so far.
On average, scaffold N50 is 4.55 mega bases (Mb) Currently, the species with the highest scaffold N50 is Aphaenogaster subterranea with 35.8 MB.
Figure 1.4: Genome assembly quality for GAGA species.
Figure 1.5: Genome assembly quality overview for GAGA species.
Table 1.1 gives an overview of all so far sequenced species.
| GAGA-id | Taxon | Tribe | Subfamily | Sequencing Technique | Genome Size | %BUSCO (Hym) | %BUSCO (Euk) | N50scf | Assembly Status |
|---|---|---|---|---|---|---|---|---|---|
| GAGA-0392 | Leptanilla sp. | Leptanillini | Leptanillinae | stLFR | 224.4382 | 93.3 | 98.0 | 0.13 | Final |
| GAGA-0025 | Megaponera analis | Ponerini | Ponerinae | P/s | 312.3925 | 96.4 | 98.1 | 6.45 | Final |
| GAGA-0352 | Leptogenys diminuta | Ponerini | Ponerinae | P/s | 347.5120 | 97.1 | 97.3 | 9.63 | Final |
| GAGA-0380 | Leptogenys cf. kitteli | Ponerini | Ponerinae | P/s | 318.0849 | 97.1 | 98.5 | 6.35 | Final |
| GAGA-0387 | Leptogenys cf. binghamii | Ponerini | Ponerinae | stLFR | 265.4717 | 89.3 | 90.6 | 0.08 | Final |
| GAGA-0386 | Euponera pilosior | Ponerini | Ponerinae | stLFR | 397.3314 | 84.2 | 96.5 | 0.05 | Final |
| GAGA-0408 | Buniapone amblyops | Ponerini | Ponerinae | stLFR | 306.4234 | 94.3 | 98.1 | 0.12 | Final |
| GAGA-0074 | Odontomachus hastatus | Ponerini | Ponerinae | P/s | 411.5903 | 96.4 | 99.2 | 3.13 | Final |
| NCBI-0011 | Odontomachus brunneus | Ponerini | Ponerinae | non-GAGA | 393.0181 | 96.5 | 98.9 | 1.76 | NCBI assembly |
| GAGA-0353 | Odontomachus cf. monticola | Ponerini | Ponerinae | P/s | 594.5146 | 95.5 | 97.3 | 2.69 | Final |
| GAGA-0301 | Anochetus risii | Ponerini | Ponerinae | P/s | 438.2270 | 94.5 | 96.9 | 4.72 | Final |
| GAGA-0246 | Pseudoneoponera rufipes | Ponerini | Ponerinae | P/s | 305.0238 | 96.8 | 97.7 | 7.76 | Final |
| GAGA-0303 | Harpegnathos venator | Ponerini | Ponerinae | P/s | 323.9676 | 97.2 | 98.5 | 3.00 | Final |
| NCBI-0009 | Harpegnathos saltator | Ponerini | Ponerinae | non-GAGA | 334.5273 | 97.3 | 98.1 | 1.08 | NCBI assembly |
| GAGA-0307 | Hypoponera opacior | Ponerini | Ponerinae | P/s | 250.7967 | 97.0 | 98.5 | 6.95 | Final |
| GAGA-0063 | Neoponera goeldii | Ponerini | Ponerinae | P/s | 554.1786 | 95.6 | 98.0 | 8.32 | Final |
| NCBI-0007 | Dinoponera quadriceps | Ponerini | Ponerinae | non-GAGA | 258.4909 | 96.3 | 97.3 | 1.36 | NCBI assembly |
| GAGA-0083 | Diacamma cf. indicum | Ponerini | Ponerinae | P/s | 232.5468 | 93.0 | 93.4 | 17.25 | Final |
| GAGA-0351 | Diacamma rugosum | Ponerini | Ponerinae | P/s | 268.9508 | 96.5 | 98.8 | 7.84 | Final |
| GAGA-0266 | Ectomomyrmex cf. javanus sp2 | Ponerini | Ponerinae | P/s | 433.5352 | 93.4 | 96.5 | 0.81 | Final |
| GAGA-0300 | Ectomomyrmex javanus | Ponerini | Ponerinae | P/s | 470.2852 | 95.8 | 98.5 | 1.82 | Final |
| GAGA-0090 | Platythyrea punctata | Platythyreini | Ponerinae | P/s | 195.8959 | 96.8 | 98.4 | 4.08 | Final |
| GAGA-0389 | Proceratium itoi | Proceratiini | Proceratiinae | stLFR | 308.3117 | 81.7 | 87.9 | 0.02 | Final |
| GAGA-0537 | Proceratium cf. bruelheidei | Proceratiini | Proceratiinae | stLFR | 307.8773 | 83.0 | 86.7 | 0.02 | Final |
| GAGA-0580 | Probolomyrmex longiscapus | Probolomyrmecini | Proceratiinae | stLFR | 315.5639 | 79.8 | 87.9 | 0.86 | Final |
| GAGA-0535 | Discothyrea kamiteta | Proceratiini | Proceratiinae | stLFR | 233.3178 | 84.1 | 91.8 | 0.02 | Final |
| GAGA-0391 | Stigmatomma cf. rubiginoum | Amblyoponini | Amblyoponinae | P/s | 285.9319 | 95.1 | 96.9 | 5.42 | Final |
| GAGA-0404 | Mystrium cf. camillae | Amblyoponini | Amblyoponinae | P/s | 289.9689 | 96.2 | 95.6 | 6.05 | Final |
| GAGA-0536 | Prionopelta kraepelini | Amblyoponini | Amblyoponinae | stLFR | 242.7429 | 75.6 | 79.6 | 0.05 | Final |
| GAGA-0552 | Paraponera clavata | tr. Paraponerinae | Paraponerinae | P/s | 226.7042 | 96.2 | 95.6 | 6.18 | Final |
| GAGA-0379 | Cerapachys sulcinodis | tr. Dorylinae | Dorylinae | P/s | 314.9558 | 96.8 | 97.7 | 2.37 | Final |
| NCBI-0001 | Ooceraea biroi | tr. Dorylinae | Dorylinae | non-GAGA | 223.8342 | 97.4 | 97.7 | 16.89 | NCBI assembly |
| GAGA-0577 | Parasyscia sp. | tr. Dorylinae | Dorylinae | stLFR | 241.0862 | 78.6 | 87.5 | 0.02 | Final |
| GAGA-0534 | Dorylus orientalis | tr. Dorylinae | Dorylinae | P/s | 190.0425 | 96.3 | 98.4 | 14.28 | Final |
| GAGA-0302 | Ochetellus glaber | Leptomyrmecini | Dolichoderinae | P/s | 300.0546 | 96.2 | 97.3 | 3.64 | Final |
| GAGA-0363 | Iridomyrmex anceps | Leptomyrmecini | Dolichoderinae | P/s | 223.6939 | 95.7 | 96.1 | 9.59 | Final |
| NCBI-0010 | Linepithema humile | Leptomyrmecini | Dolichoderinae | non-GAGA | 219.4721 | 97.2 | 98.9 | 1.40 | NCBI assembly |
| GAGA-0337 | Tapinoma melanocephalum | Tapinomini | Dolichoderinae | P/s | 254.7987 | 95.4 | 97.6 | 6.18 | Final |
| GAGA-0340 | Tapinoma cf. melanocephalum | Tapinomini | Dolichoderinae | P/s | 261.1961 | 94.6 | 96.1 | 9.68 | Final |
| GAGA-0528 | Liometopum microcephalum | Tapinomini | Dolichoderinae | P/s | 230.3274 | 96.3 | 96.4 | 1.22 | Final |
| GAGA-0343 | Pseudomyrmex spinicola | tr. Pseudomyrmecinae | Pseudomyrmecinae | P/s | 263.0094 | 96.9 | 98.1 | 4.52 | Final |
| GAGA-0365 | Tetraponera rufonigra | tr. Pseudomyrmecinae | Pseudomyrmecinae | P/s | 250.8015 | 95.3 | 98.1 | 9.03 | Final |
| GAGA-0517 | Myrmecia pilosula | Myrmeciini | Myrmeciinae | P/s | 219.4548 | 98.1 | 98.1 | 11.50 | Final |
| GAGA-0521 | Myrmecia croslandi 2n=2 | Myrmeciini | Myrmeciinae | P/s | 189.4173 | 96.6 | 96.1 | 26.09 | Final |
| GAGA-0522 | Myrmecia croslandi 2n=4 | Myrmeciini | Myrmeciinae | P/s | 195.9851 | 98.1 | 98.8 | 21.92 | Final |
| GAGA-0020 | Lasius flavus sp.2 | Lasiini | Formicinae | P/H | 320.2268 | 95.2 | 95.7 | 5.72 | Final |
| GAGA-0024 | Lasius flavus | Lasiini | Formicinae | P/H/s | 300.4456 | 97.6 | 98.8 | 18.92 | Final |
| GAGA-0177 | Lasius niger | Lasiini | Formicinae | P/H/s | 287.3905 | 96.9 | 96.5 | 19.67 | Final |
| GAGA-0532 | Lasius alienus | Lasiini | Formicinae | P/s | 287.4464 | 97.8 | 98.8 | 3.29 | Final |
| GAGA-0364 | Lasius sp1 | Lasiini | Formicinae | P/s | 250.7462 | 98.0 | 99.6 | 3.58 | Final |
| GAGA-0491 | Lasius fuliginosus | Lasiini | Formicinae | P/s | 239.9295 | 97.7 | 99.2 | 2.37 | Final |
| GAGA-0524 | Lasius fuliginosus | Lasiini | Formicinae | P/s | 238.8692 | 97.9 | 99.2 | 1.65 | Final |
| GAGA-0366 | Lasius neglectus | Lasiini | Formicinae | stLFR | 254.7609 | 92.7 | 97.3 | 0.03 | Final |
| GAGA-0026 | Myrmecocystus cf. mendax | Lasiini | Formicinae | P/H | 220.3007 | 98.1 | 99.2 | 14.29 | Final |
| GAGA-0198 | Paratrechina longicornis | Lasiini | Formicinae | P/s | 247.5501 | 97.2 | 98.5 | 11.98 | Final |
| GAGA-0275 | Euprenolepis cf wittei | Lasiini | Formicinae | P/s | 265.7238 | 97.7 | 99.2 | 2.38 | Final |
| GAGA-0332 | Pseudolasius sp. | Lasiini | Formicinae | P/s | 265.1858 | 95.8 | 96.9 | 4.62 | Final |
| GAGA-0341 | Nylanderia fulva | Lasiini | Formicinae | PacBio | 336.7758 | 97.1 | 98.8 | 2.58 | Final |
| GAGA-0055 | Gigantiops destructor | Gigantiopini | Formicinae | stLFR | 241.2114 | 68.3 | 82.8 | 0.01 | Final |
| GAGA-0406 | Myrmoteras binghamii | Myrmoteratini | Formicinae | stLFR | 282.7553 | 73.0 | 88.3 | 0.01 | Final |
| GAGA-0304 | Proformica cf. mongolica | Formicini | Formicinae | P/s | 256.7547 | 95.4 | 94.9 | 4.70 | Final |
| GAGA-0334 | Rossomyrmex quandratinodum | Formicini | Formicinae | P/s | 250.9996 | 97.5 | 98.8 | 5.05 | Final |
| GAGA-0494 | Rossomyrmex minuchae | Formicini | Formicinae | P/s | 253.1488 | 97.0 | 97.7 | 5.31 | Final |
| GAGA-0354 | Cataglyphis aenescens | Formicini | Formicinae | P/s | 278.8879 | 97.7 | 98.4 | 5.34 | Final |
| GAGA-0350 | Formica fusca | Formicini | Formicinae | P/s | 333.3169 | 95.2 | 94.5 | 2.18 | Final |
| GAGA-0359 | Formica cf. japonica | Formicini | Formicinae | P/s | 388.7580 | 96.6 | 97.6 | 1.78 | Final |
| GAGA-0485 | Formica sanguinea | Formicini | Formicinae | P/s | 348.2435 | 97.6 | 99.6 | 3.98 | Final |
| NCBI-0008 | Formica exsecta | Formicini | Formicinae | non-GAGA | 274.6670 | 96.2 | 98.4 | 1.01 | NCBI assembly |
| GAGA-0495 | Formica fusca | Formicini | Formicinae | stLFR | 245.6066 | 94.4 | 97.7 | 0.13 | Final |
| OUT-0001 | Formica selysi | Formicini | Formicinae | non-GAGA | 290.1511 | 96.9 | 98.0 | 7.92 | NCBI assembly |
| OUT-0002 | Formica cinerea | Formicini | Formicinae | PacBio | 324.0927 | 98.2 | 98.9 | 5.06 | Final |
| GAGA-0502 | Iberoformica subrufa | Formicini | Formicinae | P/s | 289.9265 | 97.9 | 97.7 | 4.81 | Final |
| GAGA-0200 | Camponotus japonicus | Camponotini | Formicinae | P/s | 305.8157 | 98.0 | 97.7 | 1.49 | Final |
| GAGA-0221 | Camponotus fellah | Camponotini | Formicinae | P/H/s | 278.1866 | 98.0 | 98.4 | 12.30 | Final |
| GAGA-0361 | Camponotus cf. fedtschenkoi | Camponotini | Formicinae | P/s | 252.3328 | 98.0 | 98.0 | 9.40 | Final |
| GAGA-0362 | Camponotus sp. | Camponotini | Formicinae | P/s | 283.8616 | 97.8 | 99.2 | 8.31 | Final |
| NCBI-0005 | Camponotus floridanus | Camponotini | Formicinae | non-GAGA | 284.0092 | 98.5 | 98.4 | 1.59 | NCBI assembly |
| GAGA-0396 | Camponotus singularis | Camponotini | Formicinae | P/s | 264.1384 | 98.0 | 98.4 | 3.46 | Final |
| GAGA-0374 | Polyrhachis illaudata | Camponotini | Formicinae | P/s | 274.1765 | 97.8 | 96.9 | 2.41 | Final |
| GAGA-0360 | Colobopsis sp. | Camponotini | Formicinae | P/s | 262.4213 | 98.3 | 99.2 | 9.35 | Final |
| GAGA-0336 | Oecophylla smaragdina | Oecophyllini | Formicinae | P/s | 218.7865 | 97.5 | 98.8 | 7.71 | Final |
| GAGA-0187 | Plagiolepis pygmaea | Plagiolepidini | Formicinae | P/H/s | 334.6678 | 96.6 | 97.7 | 32.91 | Final |
| GAGA-0338 | Lepisiota rothneyi | Plagiolepidini | Formicinae | P/s | 351.2237 | 96.7 | 97.7 | 2.55 | Final |
| GAGA-0199 | Anoplolepis gracilipes | Plagiolepidini | Formicinae | P/s | 253.3809 | 98.1 | 99.2 | 9.15 | Final |
| GAGA-0234 | Typhlomyrmex rogenhoferi | Typhlomyrmecini | Ectatomminae | stLFR | 376.5309 | 91.3 | 94.5 | 0.08 | Final |
| GAGA-0306 | Gnamptogenys bicolor | Ectatommini | Ectatomminae | P/s | 320.0701 | 96.1 | 97.3 | 5.06 | Final |
| GAGA-0028 | Myrmica rubra | Myrmicini | Myrmicinae | P/H/s | 477.0295 | 95.2 | 97.3 | 1.45 | Final |
| GAGA-0087 | Myrmica scabrinodis | Myrmicini | Myrmicinae | P/s | 477.9174 | 97.0 | 98.9 | 1.66 | Final |
| GAGA-0401 | Myrmica sp. | Myrmicini | Myrmicinae | P/s | 474.2606 | 96.5 | 97.7 | 0.71 | Final |
| GAGA-0114 | Manica rubida | Myrmicini | Myrmicinae | P/H/s | 331.0788 | 95.5 | 98.9 | 11.52 | Final |
| NCBI-0012 | Pogonomyrmex barbatus | Pogonomyrmecini | Myrmicinae | non-GAGA | 235.6213 | 93.4 | 95.7 | 0.82 | NCBI assembly |
| GAGA-0004 | Messor barbarus | Stenammini | Myrmicinae | P/H/s | 312.7939 | 97.3 | 98.1 | 13.01 | Final |
| GAGA-0413 | Messor capitatus | Stenammini | Myrmicinae | P/s | 304.9323 | 98.3 | 98.4 | 11.42 | Final |
| GAGA-0084 | Aphaenogaster subterranea | Stenammini | Myrmicinae | P/s | 415.4753 | 97.7 | 98.5 | 35.80 | Final |
| GAGA-0356 | Aphaenogaster exasperata | Stenammini | Myrmicinae | P/s | 398.4363 | 98.0 | 98.4 | 4.32 | Final |
| GAGA-0531 | Aphaenogaster famelica | Stenammini | Myrmicinae | P/s | 368.5086 | 96.8 | 96.1 | 1.63 | Final |
| GAGA-0503 | Oxyopomyrmex saulcyi | Stenammini | Myrmicinae | P/s | 274.4092 | 98.3 | 98.8 | 10.82 | Final |
| GAGA-0505 | Goniomma hispanicum | Stenammini | Myrmicinae | P/s | 290.1660 | 98.2 | 98.5 | 13.80 | Final |
| GAGA-0109 | Stenamma debile | Stenammini | Myrmicinae | P/H/s | 380.3484 | 96.7 | 96.5 | 9.27 | Final |
| GAGA-0082 | Pristomyrmex punctatus | Crematogastrini | Myrmicinae | P/s | 291.4593 | 96.2 | 98.0 | 8.36 | Final |
| GAGA-0103 | Myrmecina graminicola | Crematogastrini | Myrmicinae | P/s | 308.7440 | 95.8 | 96.9 | 1.46 | Final |
| GAGA-0256 | Acanthomyrmex ferox | Crematogastrini | Myrmicinae | P/s | 292.8476 | 96.9 | 96.9 | 2.52 | Final |
| GAGA-0098 | Harpagoxenus sublaevis | Crematogastrini | Myrmicinae | PacBio | 312.9646 | 95.4 | 96.1 | 2.52 | Final |
| GAGA-0099 | Leptothorax acervorum | Crematogastrini | Myrmicinae | PacBio | 341.7882 | 95.0 | 97.3 | 2.02 | Final |
| GAGA-0463 | Formicoxenus nitidulus | Crematogastrini | Myrmicinae | P/s | 307.0933 | 97.4 | 98.4 | 4.55 | Final |
| GAGA-0222 | Temnothorax rugatulus | Crematogastrini | Myrmicinae | PacBio | 322.3900 | 95.2 | 97.3 | 1.99 | Final |
| GAGA-0223 | Temnothorax longispinosus | Crematogastrini | Myrmicinae | PacBio | 301.5131 | 95.4 | 96.5 | 1.18 | Final |
| GAGA-0512 | Temnothorax pilagens | Crematogastrini | Myrmicinae | PacBio | 309.5717 | 96.0 | 98.1 | 1.98 | Final |
| GAGA-0513 | Temnothorax ambiguus | Crematogastrini | Myrmicinae | PacBio | 302.6095 | 96.0 | 97.7 | 2.33 | Final |
| GAGA-0224 | Temnothorax americanus | Crematogastrini | Myrmicinae | PacBio | 255.5200 | 96.2 | 97.7 | 3.89 | Final |
| GAGA-0511 | Temnothorax ravouxi | Crematogastrini | Myrmicinae | PacBio | 371.0627 | 94.6 | 95.7 | 0.62 | Final |
| GAGA-0288 | Temnothorax unifasciatus | Crematogastrini | Myrmicinae | PacBio | 286.9455 | 95.5 | 95.7 | 2.09 | Final |
| GAGA-0510 | Temnothorax nylanderi | Crematogastrini | Myrmicinae | PacBio | 293.4694 | 95.2 | 97.3 | 2.16 | Final |
| GAGA-0407 | Kartidris sp. | Crematogastrini | Myrmicinae | P/s | 238.1303 | 96.4 | 96.9 | 6.19 | Final |
| GAGA-0165 | Eutetramorium mocquerysi | Crematogastrini | Myrmicinae | P/s | 237.0488 | 98.3 | 98.8 | 9.23 | Final |
| NCBI-0013 | Vollenhovia emeryi | Crematogastrini | Myrmicinae | non-GAGA | 286.6831 | 97.5 | 98.5 | 1.35 | NCBI assembly |
| GAGA-0330 | Crematogaster cf. rogenhoferi | Crematogastrini | Myrmicinae | P/s | 365.4193 | 97.5 | 97.3 | 2.29 | Final |
| GAGA-0393 | Crematogaster cf. osakensis | Crematogastrini | Myrmicinae | P/s | 262.9190 | 96.9 | 97.3 | 4.28 | Final |
| GAGA-0395 | Crematogaster osakensis | Crematogastrini | Myrmicinae | P/s | 265.9456 | 96.5 | 96.1 | 5.67 | Final |
| GAGA-0335 | Meranoplus cf. bicolor | Crematogastrini | Myrmicinae | P/s | 253.9013 | 97.3 | 98.1 | 5.87 | Final |
| GAGA-0328 | Carebara diversa | Crematogastrini | Myrmicinae | P/s | 199.6166 | 98.4 | 99.2 | 4.85 | Final |
| GAGA-0382 | Carebara trechideros | Crematogastrini | Myrmicinae | P/s | 200.7891 | 98.5 | 99.6 | 8.19 | Final |
| GAGA-0579 | Carebara melasolena | Crematogastrini | Myrmicinae | PacBio | 201.6361 | 97.6 | 98.9 | 5.22 | Final |
| GAGA-0331 | Carebara sp. s2 | Crematogastrini | Myrmicinae | stLFR | 214.4154 | 85.5 | 93.0 | 0.04 | Final |
| GAGA-0378 | Carebara bengalensis | Crematogastrini | Myrmicinae | PacBio | 209.4950 | 95.7 | 95.7 | 6.15 | Final |
| GAGA-0578 | Carebara capreola | Crematogastrini | Myrmicinae | PacBio | 229.3550 | 96.4 | 96.5 | 5.07 | Final |
| GAGA-0533 | Carebara sp. | Crematogastrini | Myrmicinae | P/s | 194.4953 | 98.5 | 99.6 | 7.60 | Final |
| GAGA-0520 | Melissotarsus emeryi | Crematogastrini | Myrmicinae | P/s | 386.5540 | 95.6 | 97.7 | 6.49 | Final |
| GAGA-0333 | Tetramorium bicarinatum | Crematogastrini | Myrmicinae | P/s | 261.0466 | 97.6 | 98.8 | 11.33 | Final |
| GAGA-0553 | Tetramorium sp. | Crematogastrini | Myrmicinae | stLFR | 238.2826 | 87.1 | 95.3 | 0.03 | Final |
| GAGA-0527 | Tetramorium “Anergates” atratulus | Crematogastrini | Myrmicinae | P/s | 214.7570 | 96.9 | 98.8 | 16.30 | Final |
| GAGA-0085 | Tetramorium caespitum | Crematogastrini | Myrmicinae | P/s | 257.5558 | 96.5 | 96.9 | 8.26 | Final |
| GAGA-0405 | Tetramorium sp. | Crematogastrini | Myrmicinae | P/s | 262.3968 | 97.3 | 99.2 | 5.15 | Final |
| GAGA-0515 | Cardiocondyla obscurior | Crematogastrini | Myrmicinae | PacBio | 188.6064 | 98.7 | 98.9 | 5.74 | Final |
| GAGA-0245 | Monomorium pharaonis | Solenopsidini | Myrmicinae | P/H/s | 325.5337 | 97.8 | 99.2 | 29.66 | Final |
| GAGA-0454 | Solenopsis fugax | Solenopsidini | Myrmicinae | P/H/s | 383.1384 | 97.3 | 98.4 | 2.83 | Final |
| NCBI-0002 | Solenopsis invicta | Solenopsidini | Myrmicinae | non-GAGA | 413.9562 | 98.0 | 98.8 | 13.11 | NCBI assembly |
| GAGA-0346 | Megalomyrmex milenae | Solenopsidini | Myrmicinae | P/H/s | 352.0165 | 97.3 | 98.0 | 10.85 | Final |
| GAGA-0080 | Pheidole pallidula | Attini | Myrmicinae | PacBio | 302.1115 | 97.9 | 98.9 | 4.67 | Final |
| GAGA-0376 | Pheidole capellinii | Attini | Myrmicinae | P/s | 293.0382 | 95.9 | 97.3 | 5.23 | Final |
| GAGA-0530 | Pheidole yeensis | Attini | Myrmicinae | P/s | 327.1952 | 97.7 | 99.2 | 3.35 | Final |
| GAGA-0384 | Pheidole selathorax | Attini | Myrmicinae | P/s | 274.5724 | 95.1 | 94.6 | 5.30 | Final |
| GAGA-0358 | Pheidole nodus | Attini | Myrmicinae | P/s | 346.7517 | 97.0 | 97.3 | 5.82 | Final |
| NCBI-0014 | Wasmannia auropunctata | Attini | Myrmicinae | non-GAGA | 305.9982 | 96.6 | 98.1 | 1.42 | NCBI assembly |
| GAGA-0554 | Strumigenys mutica | Attini | Myrmicinae | stLFR | 232.5091 | 92.6 | 96.5 | 0.06 | Final |
| GAGA-0229 | Cephalotes cf minutus | Attini | Myrmicinae | P/s | 407.5352 | 96.2 | 98.1 | 2.79 | Final |
| GAGA-0540 | Myrmicocrypta uncinata | Attini | Myrmicinae | P/s | 441.3375 | 95.8 | 95.6 | 1.90 | Final |
| GAGA-0543 | Kalathomyrmex emeryi | Attini | Myrmicinae | P/s | 299.3814 | 97.4 | 98.0 | 6.55 | Final |
| GAGA-0541 | Mycetosoritis hartmanni | Attini | Myrmicinae | P/s | 349.2195 | 94.8 | 96.1 | 4.66 | Final |
| NCBI-0006 | Cyphomyrmex costatus | Attini | Myrmicinae | non-GAGA | 296.9971 | 97.8 | 99.6 | 1.17 | NCBI assembly |
| GAGA-0539 | Mycetophylax morschi | Attini | Myrmicinae | P/s | 308.5390 | 98.1 | 98.4 | 7.84 | Final |
| GAGA-0538 | Sericomyrmex mayri | Attini | Myrmicinae | P/s | 395.5876 | 97.9 | 98.1 | 5.32 | Final |
| GAGA-0550 | Xerolitor explicatus | Attini | Myrmicinae | P/s | 468.8864 | 94.6 | 96.5 | 0.85 | Final |
| NCBI-0015 | Trachymyrmex zeteki | Attini | Myrmicinae | non-GAGA | 267.3237 | 97.5 | 98.0 | 1.33 | NCBI assembly |
| NCBI-0017 | Trachymyrmex cornetzi | Attini | Myrmicinae | non-GAGA | 365.1377 | 97.2 | 98.4 | 0.78 | NCBI assembly |
| NCBI-0016 | Trachymyrmex septentrionalis | Attini | Myrmicinae | non-GAGA | 290.4538 | 98.0 | 98.8 | 2.52 | NCBI assembly |
| NCBI-0003 | Atta cephalotes | Attini | Myrmicinae | non-GAGA | 317.6720 | 93.4 | 97.3 | 5.15 | NCBI assembly |
| NCBI-0004 | Atta colombica | Attini | Myrmicinae | non-GAGA | 290.8997 | 98.1 | 98.8 | 2.04 | NCBI assembly |
| GAGA-0014 | Acromyrmex echinatior | Attini | Myrmicinae | P/H | 296.0807 | 98.2 | 98.8 | 15.11 | Final |
| GAGA-0220 | Acromyrmex octospinosus | Attini | Myrmicinae | stLFR | 314.9204 | 86.1 | 89.0 | 0.30 | Final |
| GAGA-0002 | Acromyrmex subterraneus | Attini | Myrmicinae | stLFR | 318.4256 | 80.1 | 89.8 | 0.09 | Final |
| GAGA-0001 | Acromyrmex ameliae | Attini | Myrmicinae | P/s | 289.5902 | 96.4 | 98.0 | 8.21 | Final |
| GAGA-0003 | Acromyrmex lobicornis | Attini | Myrmicinae | P/H | 334.9121 | 98.4 | 98.8 | 17.01 | Final |